In this raw state, sequence data provides very little biological insight. In.Unadorned genomic sequence data is simply a string of As, Ts, Gs, and Cs, with perhaps an associated confidence value for each base. If some necessary features are not accessible in the data In, and some are only available to users with administrative Note that most of these features are only available when logged Current collection: permanently remove the current collection, including all its documents and their annotations.Current document: permanently remove the current document and its annotations the collection.New collection: add an entire new collection by uploading a tar archive packaged with gzip containing the raw texts and optionally including also annotations ( brat.New document: add a single document to the current collection by entering text in a simple dialog.Automatic annotation: automatically annotate theĬurrent document using one of the tools configured for the.Export collection data: export a tar archive packaged with gzip containing the raw texts and annotations of the entire collection.eps: Encapsulated PostScript (vector format, binary) appropriate for embedding into documents.pdf: Portable Document Format (vector format, binary) appropriate for embedding into documents.png: Portable Network Graphics (bitmap format, binary) appropriate for web graphics.svg: Scalable Vector Graphics (vector format, XML) recommended for further editing of visualization (using tools such as inkscape).Export visualization: export visualization of theĬurrent document.txt: raw document text ( UTF-8 encoding).Export document data: export data for the current document.The following features are found in the data dialog: When an annotation menu is open, a different set ofĬonfigurable keyboard shortcuts is available to quick-select Sequence from those with the most entity annotations to those Right arrow: next document (or search result)ĭocuments are visited when pressing the arrow keys depends onĪllows documents to be browsed with the keyboard for example in.Left arrow: previous document (or search result).CTRL-H: repeat the previous annotation action on the current search result (after search).CTRL-G: next search result (after search).ESC: clear any open menus (canceling possible.Keyboard shortcuts are disabled.) Note: On Mac, use Cmd instead The following keyboard shortcuts are accessible in normal (Note that once created, the basic category of an annotationĬannot be changed: that is, while an entity annotation can beĬhanged into an entity annotation of another type, it cannot beĬhanged into an event or relation annotation.)įor information on how to use the normalization features Reselect: re-select the span of the annotation or the.Link: URL linking directly to the annotation.In addition to allowing the type of the annotation andĪdditional aspects such as notes to be modified, these dialogsĪlso support the following additional features: To log in into the system, first click the "Login" This feature can be used to create "hidden" Names beginning with a dot (".") will not be listed in theĬollection browser. With the fewest entity annotations are shown first. Label will invert this sort order, so that for example documents Sort the documents so that ones with the largest numbers ofĮntity annotations are shown first. For example, clicking once on "Entities" will Other criteria by clicking on the labels in the browser Possible to sort the documents in the collection browser by Statistics (the number of entity, relation and even annotations)ĭocuments are sorted by document name by default. For eachĭocument, the last modification time and simple annotation Shown in the collection browser after collections. TheĮntry "./" refers to the collection containing the Collections can be organized hierarchically: a collection canĬontain others, similarly to a directory or folder structure onĪre shown first in the document browser.
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